Marcel Kwiatkowski

Marcel Kwiatkowski

PI Dr. rer. nat.

Institute of Biochemistry
University of Innsbruck
Room no. L.03.013


Center for Chemistry and Biomedicine (CCB) Innrain 80-82, 6020 Innsbruck / Austria
Phone: +43 512 507 - 57527 | Fax: +43 512 507 - 57599
Email: Marcel.Kwiatkowski@uibk.ac.at

  Functional Proteomics and Metabolomics


Publications 

*equally contributing     °corresponding author

2019

van Pijkeren A, Bischoff R, Kwiatkowski M°. Mass spectrometric analysis of PTM dynamics using stable isotope labeled metabolic precursors in cell culture. Analyst. 2019 Nov 18;144(23):6812-6833

Saito H, Gasser A, Bolamperti S, Maeda M, Matthies L, Jähn K, Long C, Schlüter H, Kwiatkowski M, Saini V, Pajevic PD, Bellido T, Wijnen A, Mohammad K, Guise T, Taipaleenmäki H, Hesse E. TG-interacting factor 1 (Tgif1)-deficiency attenuates bone remodeling and blunts the anabolic response to parathyroid hormone. Nat Commun. 2019 Mar 22;10(1):1354.

Krutilin A, Maier S, Schuster R, Kruber S, Kwiatkowski M, Robertson WD, Hansen NO, Miller RJD, Schlüter H. Sampling of Tissues with Laser Ablation for Proteomics: Comparison of Picosecond Infrared Laser and Microsecond Infrared Laser. J Proteome Res. 2019 Jan 29.

Hänel L, Kwiatkowski M, Heikaus L, Schlüter H. Mass spectrometry-based intraoperative tumor diagnostics. Future Science OA. 2019; Vol. 5 No. 3

2018

Kwiatkowski M, Krösser D, Wurlitzer M, Steffen P, Barcaru A, Krisp C, Horvatovich P, Bischoff R, Schlüter H. Application of Displacement Chromatography to Online Two-Dimensional Liquid Chromatography Coupled to Tandem Mass Spectrometry Improves Peptide Separation Efficiency and Detectability for the Analysis of Complex Proteomes. Anal Chem. 2018 Aug 21;90(16):9951-9958.

Pouwels SD, Klont F, Kwiatkowski M, Wiersma VR, Faiz A, van den Berge M, Horvatovich P, Bischoff R, Ten Hacken NHT. Cigarette Smoking Acutely Decreases Serum Levels of the Chronic Obstructive Pulmonary Disease Biomarker sRAGE. Am J Respir Crit Care Med. 2018 Dec 1;198(11):1456-1458.

2017

Gleißner L*, Kwiatkowski M*, Myllynen L, Steffen P, Petersen C, Rothkamm K, Schlüter H, Kriegs M. Analyzing the influence of kinase inhibitors on DNA repair by differential proteomics of chromatin-interacting proteins and nuclear phospho-proteins. Oncotarget. 2017 Nov 10;8(67):110983-110993.

van den Bosch T, Kwiatkowski M, Bischoff R, Dekker FJ. Targeting transcription factor lysine acetylation in inflammatory airway diseases. Epigenomics. 2017; 9(7) 1013-1028.

Georgieva D, Hildebrand D, Simas R, Coronado MA, Kwiatkowski M, Schlüter H, Arni R, Spencer P, Betzel C. Protein profile analysis of two Australian snake venoms by one-dimensional gel electrophoresis and MS/MS experiments. Curr Med Chem. 2017, doi: 10.2174/0929867324666170601073148.

Rösch K, Kwiatkowski M, Schlüter H, Herker E. Lipid Droplet Isolation for Quantitative Mass Spectrometry Analysis. J Vis Exp. 2017 Apr 17;(122).

2016

Rösch K, Kwiatkowski M, Hofmann S, Schöbel A, Grüttner C, Wurlitzer M, Schlüter H, Herker E. Quantitative Lipid Droplet Proteome Analysis Identifies Annexin A3 as a Cofactor for HCV Particle Production. Cell Rep. 2016 Sep 20;16(12):3219-31.

Kwiatkowski M, Wurlitzer M, Kiani P, Nimer R, Omidi M, Bußmann T, Bartkowiak K, Kruber S, Uschold S, Steffen P, Lübberstedt J, Küpker N, Petersen H, Knecht R, Hansen NO, Robertson WD, Miller RJD, Schlüter H. Homogenization of human tissues via picosecond-infrared laser (PIRL) ablation: Giving a closer view on the in-vivo composition of protein species as compared to mechanical homogenization. J Proteomics. 2016. 134:193-202

Steffen P, Kwiatkowski M, Robertson WD, Zarrine-Afsar A, Deterra D, Richter V, Schlüter H. Protein species as diagnostic markers. J Proteomics. 2016; 134:5-18.

Szameit K, Berg K, Kruspe S, Valentini E, Magbanua E, Kwiatkowski M, Chauvot de Beauchêne I, Krichel B, Schamoni K, Uetrecht C, Svergun DI, Schlüter H, Zacharias M, Hahn U. Structure and target interaction of a G-quadruplex RNA-aptamer. RNA Biol. 2016; 13(10):973-987.

Petersen H, Tavakoli F, Kruber S, Münscher A, Gliese A, Hansen NO, Uschold S, Eggert D, Robertson WD, Gosau T, Sehner S, Kwiatkowski M, Schlüter H, Schumacher U, Knecht R, Miller RJ. Comparative study of wound healing in rat skin following incision with a novel picosecond infrared laser (PIRL) and different surgical modalities. Lasers Surg Med. 2016; 48(4):385-91.

2015

Kwiatkowski M, Wurlitzer M, Omidi M, Ling R, Kruber S, Nimer R, Robertson W, Horst A, Miller RJ Dwayne, Schlüter H. Ultrafast extraction of proteins from tissues using desorption by impulsive vibrational excitation. Angew Chem Int Ed Engl. 2015;54(1):285-8.

Myllynen L*, Kwiatkowski M*, Gleißner L, Riepen B, Hoffer K, Wurlitzer M, Petersen C, Dikomey E, Rothkamm K, Schlüter H, Kriegs M. Quantitative proteomics unveiled: Regulation of DNA double strand break repair by EGFR involves PARP1. Radiotherapy and Oncology. 2015;116(3):423-30.

Bartkowiak K, Kwiatkowski M, Buck F, Gorges T. M, Nilse L, Assmann V, Andreas A, Müller V, Wikman H, Riethdorf S, Schlüter H., Pantel K. Disseminated tumor cells persist in the bone marrow of breast cancer patients through sustained activation of the unfolded protein response. Cancer Res. 2015 Dec 15;75(24):5367-77.

Schulze J, Kwiatkowski M, Borner J, Schlüter H, Bruchhaus I, Burmester T, Spielmann T, Pick C. The Plasmodium falciparum exportome contains non-canonical PEXEL/HT proteins: PEXEL/HT plasticity. Molecular Microbiology. 2015; 97(2):301-14.

Tiedke J, Borner J, Beeck H, Kwiatkowski M, Schmidt H, Thiel R, Fabrizius A, Burmester T. Evaluating the Hypoxia Response of Ruffe and Flounder Gills by a Combined Proteome and Transcriptome Approach. PLoS ONE. 2015; 10(8):e0135911.

2014

Christner M, Trusch M, Rohde H, Kwiatkowski M, Schlüter H, Wolters M, Aepfelbacher M, Hentschke M. Rapid MALDI-TOF mass spectrometry strain typing during a large outbreak of Shiga-Toxigenic Escherichia coli. PLoS One. 2014; 9(7):e101924.

Steurer S, Singer JM, Rink M, Chun F, Dahlem R, Simon R, Burandt E, Stahl P, Terracciano L, Schlomm T, Wagner W, Höppner W, Omidi M, Kraus O, Kwiatkowski M, Doh O, Fisch M, Soave A, Sauter G, Wurlitzer M, Schlüter H, Minner S. MALDI imaging-based identification of prognostically relevant signals in bladder cancer using large-scale tissue microarrays. Urol Oncol. 2014;32(8):1225-33.

Munawar A, Trusch M, Georgieva D, Hildebrand D, Kwiatkowski M, Behnken H, Harder S, Arni R, Spencer P, Schlüter H, Betzel C. Elapid snake venom analyses show the specificity of the peptide composition at the level of genera Naja and Notechis. Toxins (Basel). 2014 ;6(3):850-68.

Kotasinska M, Richter V, Kwiatkowski M, Schlüter H. Sample displacement batch chromatography of proteins Methods Mol Biol. 2014;1129:325-38. doi: 10.1007/978-1-62703-977-2_24.

2013

Quaas A, Bahar AS, von Loga K, Seddiqi AS, Singer JM, Omidi M, Kraus O, Kwiatkowski M, Trusch M, Minner S, Burandt E, Stahl P, Wilczak W, Wurlitzer M, Simon R, Sauter G, Marx A, Schlüter H. MALDI imaging on large-scale tissue microarrays identifies molecular features associated with tumour phenotype in oesophageal cancer. Histopathology. 2013;63(4):455-62.

Steurer S, Borkowski C, Odinga S, Buchholz M, Koop C, Huland H, Becker M, Witt M, Trede D, Omidi M, Kraus O, Bahar AS, Seddiqi AS, Singer JM, Kwiatkowski M, Trusch M, Simon R, Wurlitzer M, Minner S, Schlomm T, Sauter G, Schlüter H. MALDI mass spectrometric imaging based identification of clinically relevant signals in prostate cancer using large-scale tissue microarrays. Int J Cancer. 2013; 133(4):920-8.

Marxen JC, Pick C, Kwiatkowski M, Burmester T. Molecular characterization and evolution of haemocyanin from the two freshwater shrimps Caridina multidentata (Stimpson, 1860) and Atyopsis moluccensis (De Haan, 1849). J Comp Physiol B. 2013; 183(5):613-24.

2012

Trusch M, Tillack K, Kwiatkowski M, Bertsch A, Ahrends R, Kohlbacher O, Martin R, Sospedra M, Schlüter H. Displacement chromatography as first separating step in online two-dimensional liquid chromatography coupled to mass spectrometry analysis of a complex protein sample--the proteome of neutrophils. J Chromatogr A. 2012; 1232:288-94.

Ahrends R, Lichtner B, Buck F, Hildebrand D, Trusch M, Kotasinska M, Kohlbacher O, Kwiatkowski M, Wagner M, Trusch M, Schlüter H. Comparison of displacement versus gradient mode for separation of a complex protein mixture by anion-exchange chromatography. J Chromatogr B Analyt Technol Biomed Life Sci. 2012; 901:34-40.

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