Marcel Kwiatkowski

Marcel Kwiatkowski

Assoc. Prof. Dr. rer. nat.

Institute of Biochemistry
University of Innsbruck
Room no. L.03.032

Center for Chemistry and Biomedicine (CCB) Innrain 80-82, 6020 Innsbruck / Austria
Phone: +43 512 507 - 57527 | Fax: +43 512 507 - 57599
Email: Marcel.Kwiatkowski@uibk.ac.at

Lab for Bioanalytics & Intermediary Metabolism

Our research aims to elucidate molecular mechanisms at the interface of metabolism and protein function in the context of cellular homeostasis, systems biology, epigenetics, cancer and metabolic diseases. The Kwiatkowski lab specialises in mass spectrometry-based cross-omics. This includes state-of-the-art proteomics, metabolomics and metabolic flux analysis. We combine cross-omics with computational modelling, cell and molecular biology to study the regulatory interplay between cellular metabolism and protein modifications. Our technological advances have always been driven by research questions that cannot be addressed with current tools, from basic biochemistry to personalised medicine and applied biotechnology.

We are currently investigating the cellular dynamics of hub metabolites (CoA, acetyl-CoA & acyl-CoAs, SAM, NAD, ATP) and how these molecules control protein modification signatures (acylation, methylation, phosphorylation) and regulatory circuits.

Research Interest

  • Cellular metabolism
  • Protein modifications
  • Biomarker research
  • Spatially resolved proteo-metabolomics & fluxomics
  • LC-MS instrumentation
  • Bioanalytical method development
  • Computational Cross-OMICs

Research Infrastructure

Our laboratory is equipped with two ultra-high resolution orbitrap mass spectrometers (Eclipse plus ETD, UVPD & 1M resolution, Exploris 480) and a sensitive triple quadrupole mass spectrometer (TQ-XS) for untargeted and targeted proteomics, metabolomics & metabolic flux analysis, and a robotic liquid handling platform (Andrew+) for automated sample processing.

Grant Support

2025 - 2028
Tyrolian Science Fund, F.51214
“Benchmarking of Signal Transduction Signatures in Cancer and Transplantation”

2024 - 2026
Austrian Centre of Industrial Biotechnology, No. 98202
“Peptide Production via Multimers in E. coli and P. pastoris”

2023 - 2025
DOC fellowship to Anna-Sophia Egger, Austrian Academy of Sciences
“Simultaneous Proteo-Metabolome Flux – Deciphering the Regulatory Interplay of Energy Metabolism and Proteome”

2021 - 2023
Tyrolian Science Fund, F.18903
“Yin Yang – the AKT-TSC-mTORC1 Axis”

2020 - 2023
Promotion of Young Talents, University of Innsbruck, 2019-Chem-10
“Functional Dyn-OMICs – Elucidation of aberrant energy metabolism and histone acetylation dynamics in tuberous sclerosis complex disease”

2018 - 2019
Noordelijke Cara Stichting
“Identification of novel molecular mechanisms regulating inflammation in pulmonary macrophages in COPD using differential acetylomics”

2017 - 2019
Marie Skłodowska-Curie Postdoctoral Research Fellowship, No. 713406
“P2B2 – Proteomics Based Pharmacological Biochemistry”

2016
Research Promotion Fund of the Faculty of Medicine Hamburg
“Investigation of the suitability of a pico-second-infrared-laser for the analysis of in-vivo proteomes of tissue samples”

2015 - 2018
Medical Technology Research Centre Hamburg (FMTHH), No. 03FMTHH15
“Development of a quantum mechanical system for the extraction of samples from tissues for molecular diagnostics”

Motivated Bachelor and Master students interested in proteomics, metabolomics and analytical biochemistry are invited to apply for internships or thesis projects. Apply at marcel.kwiatkowski@uibk.ac.at.

Education

2013
M.Sc., Biochemistry (Molecular Life Science), University of Hamburg, Germany

2016
Dr. rer. nat. (“summa cum laude“), Chemistry (Prof. Dr. Hartmut Schlüter), Mass Spectrometric Proteomics, University Medical Center Hamburg-Eppendorf, University of Hamburg, Germany

Professional Experience

2016
Postdoctoral Fellow, Mass Spectrometric Proteomics (Prof. Dr. Hartmut Schlüter), University Medical Center Hamburg-Eppendorf, Germany

2017
Postdoctoral Fellow, Department of Analytical Biochemistry, University of Groningen (Prof. Dr. Rainer Bischoff), The Netherlands

2017 - 2019
Marie Skłodowska-Curie postdoctoral fellow, Department of Analytical Biochemistry, University of Groningen (Prof. Dr. Rainer Bischoff), Department of Pharmacokinetics, Toxicology and Targeting (Prof. Dr. Barbro Melgert), University of Groningen, The Netherlands.

2019 - present
Head of the Mass Spectrometric Proteomics & Metabolomics Unit, Institute of Biochemistry, University of Innsbruck, Austria

since 2020
Assistant Professor for Bioanalytics & Intermediary Metabolism (Tenure Track), Department of Biochemistry, University of Innsbruck, Austria

since 2024
Head of the Institute of Biochemistry, University of Innsbruck, Austria

since 2025
Professor, Department of Biomedicine, University of Bergen, Norway

Honors, Awards, and Scholarships

2015
Recipient of young investigator fund, research promotion fund of the faculty of medicine (FFM), University Medical Center Hamburg-Eppendorf (UKE), Germany

2016
Graduated “Summa Cum Laude”, Dr. rer. nat., University of Hamburg, Germany

2017
Wolfgang Paul Research Prize from the German Society of Mass Spectrometry (DGMS)

2017
RESPIRE3 Marie- Skłodowska-Curie postdoctoral fellow, European Respiratory Society

Publications 

*equally contributing     °corresponding author

2025

Truszkowska M, Reisenberger E, Kali G, Stengel D, Saleh A, Seybold A, Kipura T, Kwiatkowski M, Bernkop-Schnürch A. Exploring glutathione-decorated micelles for drug delivery: A promise for enhanced cellular uptake. Colloids Surf B Biointerfaces. 2025 Mar 28:252:114664. doi: 10.1016/j.colsurfb.2025.114664. 

Stengel D, Nestl C, Postina A, Veider F, Fernández O, Sandmeier M, Kwiatkowski M, Kipura T, Braun D, Bernkop-Schnürch A. Evaluation of the dissociation behavior of hydrophobic ion pairs via HPLC analysis. Int J Pharm. 2025 Mar 15:672:125311. doi: 10.1016/j.ijpharm.2025.125311. 

Gollowitzer A, Pein H, Rao Z, Waltl L, Bereuter L, Loeser K, Meyer T, Jafari V, Witt F, Winkler R, Su F, Große S, Thürmer M, Grander J, Hotze M, Harder S, Espada L, Magnutzki A, Gstir R, Weinigel C, Rummler S, Bonn G, Pachmayr J, Ermolaeva M, Harayama T, Schlüter H, Kosan C, Heller R, Thedieck K, Schmitt M, Shimizu T, Popp J, Shindou H, Kwiatkowski M, Koeberle A. Attenuated growth factor signaling during cell death initiation sensitizes membranes towards peroxidation. Nat Commun. 2025 Feb 25;16(1):1774. doi: 10.1038/s41467-025-56711-2. 

Sharma S, Sauter R, Hotze M, Prowatke AMP, Niere M, Kipura T, Egger AS, Thedieck K, Kwiatkowski M, Ziegler M, Heiland I. GEMCAT-a new algorithm for gene expression-based prediction of metabolic alterations. NAR Genom Bioinform. 2025 Jan 31;7(1):lqaf003. doi: 10.1093/nargab/lqaf003. 

Schoepf AM, Gebhart M, Federspiel M, Heidegger I, Puhr M, Hotze M, Kwiatkowski M, Pircher A, Wolf D, Sopper S, Gust R, Salcher S. Eradication of Therapy-Resistant Cancer Stem Cells by Novel Telmisartan Derivatives. J Med Chem. 2025 Jan 9;68(1):287-306. doi: 10.1021/acs.jmedchem.4c01865.

2024

Egger AS, Rauch E, Sharma S, Kipura T, Hotze M, Mair T, Hohenegg A, Kobler P, Heiland I, Kwiatkowski M°. Linking Metabolism and Histone Acetylation Dynamics by Integrated Metabolic Flux Analysis of Acetyl-CoA and Histone Acetylation Sites.. Mol Metab. 2024. Accepted for publication.

Safari MS, Woerl P, Garmsiri C, Weber D, Kwiatkowski M, Hotze M, Kuenkel L, Lang L, Erlacher M, Gelpi E, Hainfellner JA, Baier G, Baier-Bitterlich G, Nedden SZ. Glucose-1,6-bisphosphate: a new gatekeeper of cerebral mitochondrial pyruvate uptake. Mol Metab. 2024 Aug 23:102018. doi: 10.1016/j.molmet.2024.102018.

Kipura T, Hotze M, Hofer A, Egger AS, Timpen LE, Opitz C, Townsend PA, Gethings LA, Thedieck K, Kwiatkowski M°. Automated liquid handling extraction and rapid quantification of underivatized amino acids and tryptophan metabolites from human serum and plasma using dual-column U(H)PLC-MRM-MS and its application to prostate cancer study. Metabolites. 2024, 14(7), 370. doi:10.3390/metabo14070370.

Godbole S, Voß H, Gocke A, Schlumbohm S, Schumann Y, Peng B, Mynarek M, Rutkowski S, Dottermusch M, Dorostkar MM, Koshunov A, Mair T, Pfister SM, Kwiatkowski M, Hotze M, Neumann P, Hartmann C, Weis J, Liesche-Starnecker F, Guan Y, Moritz M, Siebels B, Struve N, Schlüter H, Schüller U, Krisp C, Neumann JE. Multiomic profilling of medulloblastoma reveals subtype-specific targetable alterations at the proteome and N-glycan level. Nat Commun. 2024 Jul 24;15(1):6237. doi: 10.1038/s41467-024-50554-z.

Spathopoulou A, Sauerwein GA, Marteau V, Podlesnic M, Lindlbauer T, Kipura T, Hotze M, Gabassi E, Kruszewski K, Koskuvi M, Réthelyi JM, Apáti Á, Conti L, Ku M, Koal T, Müller U, Talmazan RA, Ojansuu I, Vaurio O, Lähteenvuo M, Lehtonen Š, Mertens J, Kwiatkowski M, Günther K, Tiihonen J, Koistinaho J, Trajanoski Z, Edenhofer F. Integrative metabolomics-genomics analysis identifies key networks in a stem cell-based model of schizophrenia. Mol Psychiatry. 2024 Apr 29. doi: 10.1038/s41380-024-02568-8.

Oosterhof M, Coussement L, van Pijkeren A, Kwiatkowski M, Zwinderman MRH, Dekker FJ, de Meyer T, Reitsema VA, Bischoff R, Guryev V, Bouma HR, Henning RH, Rot MG. Changes in histone lysine acetylation, but not DNA methylation during facultative hibernation in Syrian hamster liver. Epigenetics Communications. 2024 Volume: 4, Article 1. doi: 0.1186/s43682-023-00024-2

2023

Bartkowiak K, Mossahebi Mohammadi P, Gärtner S, Kwiatkowski M, Andreas A, Geffken M, Peine S, Verpoort K, Scholz U, Deutsch TM, Michel LL, Schneeweiss A, Thewes V, Trumpp A, Müller V, Riethdorf S, Schlüter H, Pantel K. Detection and Isolation of Circulating Tumor Cells from Breast Cancer Patients Using CUB Domain-Containing Protein 1. J Proteome Res. 2023 Apr 7;22(4):1213-1230. doi: 10.1021/acs.jproteome.2c00739

Russo S, Kwiatkowski M, Wolters JC, Gerding A, Hermans J, Govorukhina N, Bischoff R, Melgert BN. Effects of lysine deacetylase inhibitor treatment on LPS responses of alveolar-like macrophages. J Leukoc Biol. 2024 Feb 23;115(3):435-449. doi: 10.1093/jleuko/qiad121. PMID: 37811856

Vasse GF, Russo S, Barcaru A, Oun AAA, Dolga AM, van Rijn P, Kwiatkowski M, Govorukhina N, Bischoff R, Melgert BN. Collagen type I alters the proteomic signature of macrophages in a collagen morphology-dependent manner. Sci Rep. 2023 Apr 6;13(1):5670. doi: 10.1038/s41598-023-32715-0.

van Pijkeren A, Egger AS, Hotze M, Zimmermann E, Kipura T, Grander J, Gollowitzer A, Koeberle A, Bischoff R, Thedieck K, Kwiatkowski M.  Proteome Coverage after Simultaneous Proteo-Metabolome Liquid-Liquid Extraction. J Proteome Res. 2023 Mar 3;22(3):951-966. doi: 10.1021/acs.jproteome.2c00758. Epub 2023 Feb 10. PMID: 36763818 

2022

Zhang Y, Dreyer B, Govorukhina N, Heberle A, Končarević S, Krisp C, Opitz C, Pfänder P, Bischoff R, Schlüter H, Kwiatkowski M°, Thedieck K°, Horvatovich P°. Comparative Assessment of Quantification Methods for Tumor Tissue Phosphoproteomics. Anal Chem. 2022. Published online. https://doi.org/10.1021/acs.analchem.2c01036

Rainer T, Egger AS, Zeindl R, Tollinger M, Kwiatkowski M°, Müller T°. 3D-Printed High-Pressure-Resistant Immobilized Enzyme Microreactor (μIMER) for Protein Analysis. Anal Chem. 2022 Jun 21;94(24):8580-8587. doi: 10.1021/acs.analchem.1c05232. Epub 2022 Jun 9. PMID: 35678765

Thürmer M, Gollowitzer A, Pein H, Neukirch K, Gelmez E, Waltl L, Wielsch N, Winkler R, Löser K, Grander J, Hotze M, Harder S, Döding A, Meßner M, Troisi F, Ardelt M, Schlüter H, Pachmayr J, Gutiérrez-Gutiérrez Ó, Rudolph KL, Thedieck K, Schulze-Späte U, González-Estévez C, Kosan C, Svatoš A, Kwiatkowski M, Koeberle A. PI(18:1/18:1) is a SCD1-derived lipokine that limits stress signaling. Nat Commun. 2022 May 27;13(1):2982. doi: 10.1038/s41467-022-30374-9. PMID: 35624087

Kwiatkowski M, Hotze M, Schumacher J, Asif AR, Pittol JMR, Brenig B, Ramljak S, Zischler H, Herlyn H. Protein speciation is likely to increase the chance of proteins to be determined in 2-DE/MS. Electrophoresis. 2022 Mar 14. Online ahead of print. PMID: 35285965.

Klont F, Horvatovich P, Bowler RP, van Rikxoort E, Charbonnier JP, Kwiatkowski M, Lynch DA, Humphries S, Bischoff R, Ten Hacken NHT, Pouwels SD. Plasma sRAGE levels strongly associate with centrilobular emphysema assessed by HRCT scans. Respir Res. 2022 Jan 24;23(1):15. doi: 10.1186/s12931-022-01934-w. PMID: 35073932.

Mirzania F, Moridi Farimani M, Sarrafi Y, Nejad Ebrahimi S, Troppmair J, Kwiatkowski M, Stuppner H, Alilou M. New Sesterterpenoids from Salvia mirzayanii Rech.f. and Esfand. Stereochemical Characterization by Computational Electronic Circular Dichroism. Front Chem. 2022 Jan 20;9:783292. doi: 10.3389/fchem.2021.783292. eCollection 2021. PMID: 35127644

Nitschke C, Markmann B, Toelle M,Kropidlowski J, Belloum Y, Goetz MR, Schlüter H,, Kwiatkowski M, Sinn M, Izbicki J, Pantel K, Güngör C, Uzunoglu FG, Wikman H. Characterization of RARRES1 Expression on Circulating Tumor Cells as Unfavorable Prognostic Marker in Resected Pancreatic Ductal Adenocarcinoma Patients. Cancers (Basel) 2022 Sep 10;14(18):4405. doi: 10.3390/cancers14184405

2021

Cattelani C, Lesiak D, Liebscher G, Singer II, Stasyk T, Wallnöfer MH, Heberle AM, Corti C, Hess MW, Pfaller K, Kwiatkowski M, Pramstaller PP, Hicks AA, Thedieck K, Müller T, Huber LA, Eca Guimaraes de Araujo M. The SZT2 Interactome Unravels New Functions of the KICSTOR Complex. Cells. 2021 Oct 9;10(10):2711. doi: 10.3390/cells10102711. PMID: 34685691.

Russo S, Kwiatkowski M, Govorukhina N, Bischoff R, Melgert BN. Meta-Inflammation and Metabolic Reprogramming of Macrophages in Diabetes and Obesity: The Importance of Metabolites. Front. Immunol., doi: 10.3389/fimmu.2021.746151.

Dietze J, van Pijkeren A, Egger AS, Ziegler M, Kwiatkowski M°, Heiland I°. Natural isotope correction improves analysis of protein modification dynamics. Anal Bioanal Chem. 2021 Oct 27. doi: 10.1007/s00216-021-03732-7. Online ahead of print.

Klont F, Kwiatkowski M, Faiz A, van den Bosch T, Pouwels SD, Dekker FJ, ten Hacken NHT, Horvatovich P, Bischoff R. Adsorptive Microtiter Plates As Solid Supports in Affinity Purification Workflows. J. Proteome Res. 2021. Just accepted. doi.org/10.1021/acs.jproteome.1c00623

van Pijkeren A, Dietze J, Brotons AS, Egger AS, Lijster T, Barcaru A, Hotze M, Kobler P, Dekker FJ, Horvatovich P, Melgert BN, Ziegler M, Thedieck K, Heiland I, Bischoff R, Kwiatkowski M°. Combined Metabolic and Chemical (CoMetChem) Labeling Using Stable Isotopes-a Strategy to Reveal Site-Specific Histone Acetylation and Deacetylation Rates by LC-MS. Anal. Chem. 2021 Sep 28;93(38):12872-12880. doi: 10.1021/acs.analchem.1c01359.

Bartkowiak K, Heidrich I, Kwiatkowski M, Banys-Paluchowski M, Andreas A, Wurlitzer M, Geffken M, Voß H, Zeller T, Blankenberg S, Peine S, Joosse SA, Müller V, Schlüter H, Oliveira-Ferrer L, Pantel K. Circulating Cellular Communication Network Factor 1 Protein as a Sensitive Liquid Biopsy Marker for Early Detection of Breast Cancer. Clin. Chem. 2021 Aug 30;hvab153. doi: 10.1093/clinchem/hvab153.

Sánchez Brotons A, Eriksson JO, Kwiatkowski M, Wolters JC, Kema IP, Barcaru A, Kuipers F, Bakker SJL, Bischoff R, Suits F, Horvatovich P. Pipelines and Systems for Threshold-Avoiding Quantification of LC-MS/MS Data. Anal. Chem. 2021, 93, 32, 11215–11224. doi: 10.1021/acs.analchem.1c01892. PMID: 34355890.

Hofmann BT, Picksak AS, Kwiatkowski M, Grupp K, Jücker M, Bachmann K, Mercanoglu B, Izbicki JR, Kahlert C, Bockhorn M, Güngör C, Ewald F, Wolters-Eisfeld G. Truncated O-GalNAc glycans impact on fundamental signaling pathways in pancreatic cancer. Glycobiology. 2021 Aug 18;cwab088. doi: 10.1093/glycob/cwab088. PMID: 34420045. Online ahead of print.

Orfanoudaki M, Hartmann A, Alilou M, Mehic N, Kwiatkowski M, Jöhrer K, Nguyen Ngoc H, Hensel A, Greil R, Ganzera M. Cytotoxic Compounds of Two Demosponges (Aplysina aerophoba and Spongia sp.) from the Aegean Sea. Biomolecules. 2021 May; 11(5): 723. Published online 2021 May 12. doi: 10.3390/biom11050723.

Rauch J, Barton J, Kwiatkowski M, Wunderlich M, Steffen P, Moderzynski K, Papp S, Höhn K, Schwanke H, Witt S, Richardt U, Mehlhoop U, Schlüter H, Pianka V, Fleischer B, Tappe D, Osterloh A. GroEL is an immunodominant surface-exposed antigen of Rickettsia typhi. PLoS One. 2021 Jun 10;16(6):e0253084. doi: 10.1371/journal.pone.0253084. eCollection 2021. PMID: 3411121

Heikaus L, Hidayah S, Gaikwad M, Kotasinska M, Richter V, Kwiatkowski M, Schlüter H. Sample Displacement Batch Chromatography of Proteins. Methods Mol Biol. 2021;2178:285-299. doi: 10.1007/978-1-0716-0775-6_19. PMID: 33128756

Senatore E, Chiuso F, Rinaldi L, Intartaglia D, Delle Donne R, Pedone E, Catalanotti B, Pirone L, Fiorillo B, Moraca F, Giamundo G, Scala G, Raffeiner A, Torres-Quesada O, Stefan E, Kwiatkowski M, van Pijkeren A, Morleo M, Franco B, Garbi C, Conte I, Feliciello A. EMBO J. 2021 May 2:e106503. doi: 10.15252/embj.2020106503.

Bartkowiak K, Heidrich I, Kwiatkowski M, Gorges TM, Andreas A, Geffken M, Verpoort K, Müller V, Schlüter H, Pantel K. Cysteine-Rich Angiogenic Inducer 61: Pro-Survival Function and Role as a Biomarker for Disseminating Breast Cancer Cells. Cancers (Basel). 2021 Feb 2;13(3):563. doi: 10.3390/cancers13030563.

2020

Heikaus L, Hidayah S, Gaikwad M, Kotasinska M, Richter V, Kwiatkowski M, Schlüter H. Sample Displacement Batch Chromatography of Proteins. Methods Mol Biol. 2021;2178:285-299. PMID: 33128756 

Kwiatkowski M, Asifb AR, Schumacher J, Brenig B, Zischler H, Herlyn H. Intra-Protein Coevolution Is Increasingly Functional with Greater Proximity to Fertilization – Assessing the Share of Functional Coevolution inside Proteins. Cytogenetic and Genome Research. 2020;160(6):295-308. PMID: 32683365. 

Wegrzyn AB, Herzog K, Gerding A, Kwiatkowski M, Wolters JC, Dolga AM, van Lint AEM, Wanders RJA, Waterham HR, Bakker BM. Fibroblast-specific genome-scale modelling predicts an imbalance in amino acid metabolism in Refsum disease. FEBS J. 2020 Mar 11. PMID: 32160399.

2019

van Pijkeren A, Bischoff R, Kwiatkowski M°. Mass spectrometric analysis of PTM dynamics using stable isotope labeled metabolic precursors in cell culture. Analyst. 2019 Nov 18;144(23):6812-6833

Saito H, Gasser A, Bolamperti S, Maeda M, Matthies L, Jähn K, Long C, Schlüter H, Kwiatkowski M, Saini V, Pajevic PD, Bellido T, Wijnen A, Mohammad K, Guise T, Taipaleenmäki H, Hesse E. TG-interacting factor 1 (Tgif1)-deficiency attenuates bone remodeling and blunts the anabolic response to parathyroid hormone. Nat Commun. 2019 Mar 22;10(1):1354.

Krutilin A, Maier S, Schuster R, Kruber S, Kwiatkowski M, Robertson WD, Hansen NO, Miller RJD, Schlüter H. Sampling of Tissues with Laser Ablation for Proteomics: Comparison of Picosecond Infrared Laser and Microsecond Infrared Laser. J Proteome Res. 2019 Jan 29; 18(3):1451-1457.

Hänel L, Kwiatkowski M, Heikaus L, Schlüter H. Mass spectrometry-based intraoperative tumor diagnostics. Future Science OA. 2019; Vol. 5 No. 3

2018

Kwiatkowski M, Krösser D, Wurlitzer M, Steffen P, Barcaru A, Krisp C, Horvatovich P, Bischoff R, Schlüter H. Application of Displacement Chromatography to Online Two-Dimensional Liquid Chromatography Coupled to Tandem Mass Spectrometry Improves Peptide Separation Efficiency and Detectability for the Analysis of Complex Proteomes. Anal Chem. 2018 Aug 21;90(16):9951-9958.

Pouwels SD, Klont F, Kwiatkowski M, Wiersma VR, Faiz A, van den Berge M, Horvatovich P, Bischoff R, Ten Hacken NHT. Cigarette Smoking Acutely Decreases Serum Levels of the Chronic Obstructive Pulmonary Disease Biomarker sRAGE. Am J Respir Crit Care Med. 2018 Dec 1;198(11):1456-1458.

2017

Gleißner L*, Kwiatkowski M*, Myllynen L, Steffen P, Petersen C, Rothkamm K, Schlüter H, Kriegs M. Analyzing the influence of kinase inhibitors on DNA repair by differential proteomics of chromatin-interacting proteins and nuclear phospho-proteins. Oncotarget. 2017 Nov 10;8(67):110983-110993.

van den Bosch T, Kwiatkowski M, Bischoff R, Dekker FJ. Targeting transcription factor lysine acetylation in inflammatory airway diseases. Epigenomics. 2017; 9(7) 1013-1028.

Georgieva D, Hildebrand D, Simas R, Coronado MA, Kwiatkowski M, Schlüter H, Arni R, Spencer P, Betzel C. Protein profile analysis of two Australian snake venoms by one-dimensional gel electrophoresis and MS/MS experiments. Curr Med Chem. 2017, doi: 10.2174/0929867324666170601073148.

Rösch K, Kwiatkowski M, Schlüter H, Herker E. Lipid Droplet Isolation for Quantitative Mass Spectrometry Analysis. J Vis Exp. 2017 Apr 17;(122).

2016

Rösch K, Kwiatkowski M, Hofmann S, Schöbel A, Grüttner C, Wurlitzer M, Schlüter H, Herker E. Quantitative Lipid Droplet Proteome Analysis Identifies Annexin A3 as a Cofactor for HCV Particle Production. Cell Rep. 2016 Sep 20;16(12):3219-31.

Kwiatkowski M, Wurlitzer M, Kiani P, Nimer R, Omidi M, Bußmann T, Bartkowiak K, Kruber S, Uschold S, Steffen P, Lübberstedt J, Küpker N, Petersen H, Knecht R, Hansen NO, Robertson WD, Miller RJD, Schlüter H. Homogenization of human tissues via picosecond-infrared laser (PIRL) ablation: Giving a closer view on the in-vivo composition of protein species as compared to mechanical homogenization. J Proteomics. 2016. 134:193-202

Steffen P, Kwiatkowski M, Robertson WD, Zarrine-Afsar A, Deterra D, Richter V, Schlüter H. Protein species as diagnostic markers. J Proteomics. 2016; 134:5-18.

Szameit K, Berg K, Kruspe S, Valentini E, Magbanua E, Kwiatkowski M, Chauvot de Beauchêne I, Krichel B, Schamoni K, Uetrecht C, Svergun DI, Schlüter H, Zacharias M, Hahn U. Structure and target interaction of a G-quadruplex RNA-aptamer. RNA Biol. 2016; 13(10):973-987.

Petersen H, Tavakoli F, Kruber S, Münscher A, Gliese A, Hansen NO, Uschold S, Eggert D, Robertson WD, Gosau T, Sehner S, Kwiatkowski M, Schlüter H, Schumacher U, Knecht R, Miller RJ. Comparative study of wound healing in rat skin following incision with a novel picosecond infrared laser (PIRL) and different surgical modalities. Lasers Surg Med. 2016; 48(4):385-91.

2015

Kwiatkowski M, Wurlitzer M, Omidi M, Ling R, Kruber S, Nimer R, Robertson W, Horst A, Miller RJ Dwayne, Schlüter H. Ultrafast extraction of proteins from tissues using desorption by impulsive vibrational excitation. Angew Chem Int Ed Engl. 2015;54(1):285-8.

Myllynen L*, Kwiatkowski M*, Gleißner L, Riepen B, Hoffer K, Wurlitzer M, Petersen C, Dikomey E, Rothkamm K, Schlüter H, Kriegs M. Quantitative proteomics unveiled: Regulation of DNA double strand break repair by EGFR involves PARP1. Radiotherapy and Oncology. 2015;116(3):423-30.

Bartkowiak K, Kwiatkowski M, Buck F, Gorges T. M, Nilse L, Assmann V, Andreas A, Müller V, Wikman H, Riethdorf S, Schlüter H., Pantel K. Disseminated tumor cells persist in the bone marrow of breast cancer patients through sustained activation of the unfolded protein response. Cancer Res. 2015 Dec 15;75(24):5367-77.

Schulze J, Kwiatkowski M, Borner J, Schlüter H, Bruchhaus I, Burmester T, Spielmann T, Pick C. The Plasmodium falciparum exportome contains non-canonical PEXEL/HT proteins: PEXEL/HT plasticity. Molecular Microbiology. 2015; 97(2):301-14.

Tiedke J, Borner J, Beeck H, Kwiatkowski M, Schmidt H, Thiel R, Fabrizius A, Burmester T. Evaluating the Hypoxia Response of Ruffe and Flounder Gills by a Combined Proteome and Transcriptome Approach. PLoS ONE. 2015; 10(8):e0135911.

2014

Christner M, Trusch M, Rohde H, Kwiatkowski M, Schlüter H, Wolters M, Aepfelbacher M, Hentschke M. Rapid MALDI-TOF mass spectrometry strain typing during a large outbreak of Shiga-Toxigenic Escherichia coli. PLoS One. 2014; 9(7):e101924.

Steurer S, Singer JM, Rink M, Chun F, Dahlem R, Simon R, Burandt E, Stahl P, Terracciano L, Schlomm T, Wagner W, Höppner W, Omidi M, Kraus O, Kwiatkowski M, Doh O, Fisch M, Soave A, Sauter G, Wurlitzer M, Schlüter H, Minner S. MALDI imaging-based identification of prognostically relevant signals in bladder cancer using large-scale tissue microarrays. Urol Oncol. 2014;32(8):1225-33.

Munawar A, Trusch M, Georgieva D, Hildebrand D, Kwiatkowski M, Behnken H, Harder S, Arni R, Spencer P, Schlüter H, Betzel C. Elapid snake venom analyses show the specificity of the peptide composition at the level of genera Naja and Notechis. Toxins (Basel). 2014 ;6(3):850-68.

Kotasinska M, Richter V, Kwiatkowski M, Schlüter H. Sample displacement batch chromatography of proteins Methods Mol Biol. 2014;1129:325-38. doi: 10.1007/978-1-62703-977-2_24.

2013

Quaas A, Bahar AS, von Loga K, Seddiqi AS, Singer JM, Omidi M, Kraus O, Kwiatkowski M, Trusch M, Minner S, Burandt E, Stahl P, Wilczak W, Wurlitzer M, Simon R, Sauter G, Marx A, Schlüter H. MALDI imaging on large-scale tissue microarrays identifies molecular features associated with tumour phenotype in oesophageal cancer. Histopathology. 2013;63(4):455-62.

Steurer S, Borkowski C, Odinga S, Buchholz M, Koop C, Huland H, Becker M, Witt M, Trede D, Omidi M, Kraus O, Bahar AS, Seddiqi AS, Singer JM, Kwiatkowski M, Trusch M, Simon R, Wurlitzer M, Minner S, Schlomm T, Sauter G, Schlüter H. MALDI mass spectrometric imaging based identification of clinically relevant signals in prostate cancer using large-scale tissue microarrays. Int J Cancer. 2013; 133(4):920-8.

Marxen JC, Pick C, Kwiatkowski M, Burmester T. Molecular characterization and evolution of haemocyanin from the two freshwater shrimps Caridina multidentata (Stimpson, 1860) and Atyopsis moluccensis (De Haan, 1849). J Comp Physiol B. 2013; 183(5):613-24.

2012

Trusch M, Tillack K, Kwiatkowski M, Bertsch A, Ahrends R, Kohlbacher O, Martin R, Sospedra M, Schlüter H. Displacement chromatography as first separating step in online two-dimensional liquid chromatography coupled to mass spectrometry analysis of a complex protein sample--the proteome of neutrophils. J Chromatogr A. 2012; 1232:288-94.

Ahrends R, Lichtner B, Buck F, Hildebrand D, Trusch M, Kotasinska M, Kohlbacher O, Kwiatkowski M, Wagner M, Trusch M, Schlüter H. Comparison of displacement versus gradient mode for separation of a complex protein mixture by anion-exchange chromatography. J Chromatogr B Analyt Technol Biomed Life Sci. 2012; 901:34-40.

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