Cost Action 24118
Advancing human brainstem MRI and
its application in clinical research and practice

A European Cost Action Network 2025 - 2029

IBH LOGO with Text cropped

What our Action is about

The ImagingBrainstemHealth COST Action brings together researchers and clinicians to unlock the full potential of human brainstem imaging.

By harmonising MRI methods tailored for the brainstem, supporting training, and building shared resources, the network aims to make the brainstem visible, measurable, and more accessible for clinical research and practice.

For more details on our Action see our Action's proposal memorandum of understanding
For a quick overview of COST actions and ours in particular see these slides.

The COST Action currently includes participants from 28 countries worldwide.

Interested to help us achieve this aim? Here is some info for you:

What is a COST Action? An EU-centered multidisciplinary research network which brings together a critical mass of experts on a topic to advance a specific area of research internationally – in our case using MRI (Magnetic Resonance Imaging) to understand the brainstem‘s role in health and disease.

What can you do in the Action? Participate in scientific exchanges and collaborations through interdisciplinary meetings and work groups, research visits, joint conferences, training opportunities.

What do we aim to create in the Action? Methods harmonization, brainstem image databases, training and info materials for brainstem novices, overviews of state of the art in brainstem functions in normal and clinical populations and methods for brainstem imaging and data analyses.

What is funded / not funded for Action members? There is no funding for research work, but funding for networking (i.e. travel, lab visits, meetings, as well as scientific dissemination) – more detailed info on conference grants and scientific missions here and infos on events (our annual meeting, Working Group meetings and traning schools) here

 

How our Action is doing the work

We created 5 Working Groups, each dedicated to addressing key challenges in the field of brainstem imaging, which you can join:

WG1: Brainstem Mapping image

WG1: Brainstem Mapping
(Atlases & post-mortem validation)

LOGO HIRNSTAMM

WG2: Brainstem Imaging
(Best practices & methods development Brainstem MRI)

LOGO HIRNSTAMM

WG3: Brainstem Analyses
(Best practices & methods development in segmentation & data processing)

Major brainstem neuromodulatory systems

WG4: Brainstem Function
(overview & experimental paradigms brainstem function - humans & animals)

LOGO HIRNSTAMM

WG5: Brainstem Clinic
(overview brainstem in clinical conditions & new targets for therapies)

Who can join us? 

Anyone with strong interest and/or expertise in advancing brainstem research and its applications

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Just a few reasons why our action is relevant

The brainstem is hard to study with standard imaging because it is small, complex, and contains many tiny structures. We need to review current methods and identify as well as communicate best practices to establish standards in our scientific community.

The brainstem is one of the first brain regions affected in many neurodegenerative diseases, making it an important target for identifying early (prodromal) biomarkers.

Brainstem dysfunction is furthermore linked to numerous psychiatric and neurological disorders, but currently cannot be incorporated well into personalized treatments due to a lack of studies collecting data on the human brainstem. Recent MRI advances now make brainstem imaging feasible in standard clinical settings. We need to accelerate the translation from brainstem MRI methods development to clinical research and practice.

Despite promising approaches for investigating the brainstem in vivo in humans, there is still a lot of methods development to do in terms of e.g. mapping currently inaccessible brainstem structures and optimising imaging sequences to allow investigating them in a clinical setting. We need to establish an exchange between clinicians and methods experts for user-oriented methods development to target the most important open questions first.

We need to increase the community of researchers applying brainstem MRI, independent of their available MRI infrastructures. Our Action will build up brainstem MRI data repositories and develop training materials with practical hands-on examples in order to allow for more clinicians and researchers to use brainstem MRI in their work.

images BS

Examples of imaging of the red nucleus and substantia nigra across different field strengths (1.5, 3T, 7T), in vivo or post mortem and with different imaging sequences. Only the two images on the left are acquired in the same person, numbers and outlines indicate labelled structures.

Examples of imaging of the red nucleus and substantia nigra across different field strengths (1.5, 3T, 7T), in vivo or post mortem and with different imaging sequences. Only the two images on the left are acquired in the same person, numbers and outlines indicate labelled structures.


Areas of Expertise Relevant for the Action

● Neuroimaging, computational neuroscience, image analysis, automated segmentation approaches, denoising of MRI data, sequence development, (electrophysiological) recordings in animal models, postmortem neuroanatomy

● Clinical research with relevance for the brainstem in animal models or humans: Neurological disorders (e.g. Alzheimer's disease, Huntington's disease, Parkinson's disease, …), Psychiatric disorders (Chronic pain, Depression, PTSD, …)

● Cognitive neuroscientific research with relevance for the brainstem in animal models or humans: Motor, sensory, cognitive, emotional, autonomic, vestibular functions, ….

Keywords

● Magnetic Resonance Imaging

● Brainstem Mapping

● Brainstem disorder

● Prodromal Neurodegeneration

Action Details

MoU - 027/25

 CSO Approval date - 19/05/2025

 Start date - 17/10/2025

 End date - 16/10/2029


Funding Statement

COST

COST (European Cooperation in Science and Technology) is a funding agency for research and innovation networks. Our Actions help connect research initiatives across Europe and enable scientists to grow their ideas by sharing them with their peers. This boosts their research, career and innovation.

Contact

COST Association

Avenue du Boulevard – Bolwerklaan 21
1210 Brussels, Belgium

Mail: office@cost.eu

Tel: +32 (0)2 533 3800

Web.: www.cost.eu

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