Publications of the Institute of Microbiology 2009

Publications 2009

(Co-)Edited Books

Anthology / Collected Edition (Editorship)
  • Margesin, R. (2009): Permafrost Soils. Dordrecht - Heidelberg - London - New York - Berlin: Springer (= Soil Biology, Volume 16). ISBN 978-3-540-69370-3.

(Co-)Edited Journals and Book Series

(Co-)Editorship of Book Series and Journals
  • Goberna, M.: Mitglied Editiorial Board / Gutachten - Applied Soil Ecology, 2008-06-01 - 2009-07-02.

  • Illmer, P.: Associate Editor / Gutachter - Journal of Environmental Quality, 2004-01-01 on-going.

  • Insam, H.: Chief Editor - Applied Soil Ecology, 2005-01-01 on-going. (Web link)

  • Margesin, R.: Member of the Editorial Board - International Biodeterioration & Biodegradation, 2002-01-01 on-going.

  • Peintner, U.: Mitglied im Editorial Board - Micologia e Vegetazione Mediterranea, 2005-01-01 on-going.

  • Pöder, R.: Editorial Committee/Editorial Board - Rivista di Micologia, 2005-01-01 on-going.

  • Pöder, R.: Editorial Committee/Editorial Board - Acta Mycologica, 2005-01-01 on-going.

Contributions to Books / Journals

Journal Article (Original Paper)
  • Bougnom, B.P.; Insam, H. (2009): Ash additives to compost affect soil microbial communities and apple seedling growth.
    In: Bodenkultur 60, pp. 5 - 15.

  • Bougnom, B.P.; Maier, J.; Etoa, F.X.; Insam, H. (2009): Composts with wood ash addition: a risk or a chance for ameliorating acid tropical soils?
    In: Geoderma 153/3-4, pp. 402 - 407.

  • Brotzu, R.; Peintner, U. (2009): Cortinarius cedretorum var. halimiorum, a new variety of a Phlegmacium associated with Halimium halimifolium (Cistaceae) in Mediterranean coastal sand dunes.
    In: Bresadoliana 1, pp. 25 - 44.

  • Cayuela, M.L.; Mondini, C.; Insam, H.; Sinicco, T.; Franke-Whittle, I.H. (2009): Plant and animal wastes composting: Effects of the N source on process performance.
    In: Bioresource Technology 100/12, pp. 3097 - 3106.

  • Frank, H.; Zilker, T.; Kirchmair, M.; Eyer, F.; Haberl, B.; Tuerkoglu-Raach, G.; Wessely, M.; Gröne, H.-J.; Heemann, U. (2009): Acute renal failure by ingestion of Cortinarius species confounded with psychoactive mushrooms.
    In: Clinical Nephrology 71/5, pp. 557 - 562.

  • Franke-Whittle, I.H; Goberna, M.; Insam, H. (2009): Design and testing of real-time PCR primers for the quantification of Methanoculleus, Methanosarcina, Methanothermobacter and a group of uncultured methanogens.
    In: Canadian Journal of Microbiology 55, pp. 611 - 616.

  • Franke-Whittle, I.H.; Goberna, M.; Pfister, V.; Insam, H. (2009): Design and development of the ANAEROCHIP microarray for investigation of methanogenic communities in biogas reactors.
    In: Journal of Microbiological Methods 79, pp. 279 - 288.

  • Franke-Whittle, I.H.; Knapp, B.A.; Fuchs, J.; Kaufmann, R.; Insam, H. (2009): Application of COMPOCHIP microarray to investigate the bacterial communities of different composts.
    In: Microbial Ecology 57/3, pp. 510 - 521. (DOI)

  • Goberna, M.; Insam, H.; Franke-Whittle, I.H (2009): Effect of biowaste sludge maturation on the diversity of thermophilic bacteria and archaea in an anaerobic reactor.
    In: Applied and Environmental Microbiology 75/8, pp. 2566 - 2572.

  • Gratia, E.; Weekers, F.; Margesin, R.; D’Amico, S.; Thonart, P.; Feller, G. (2009): Selection of a cold-adapted bacterium for bioremediation of wastewater at low temperatures.
    In: Extremophiles 13, pp. 763 - 768.

  • Haselwandter, K. (2009): Mycorrhizal fungi: Colonization pattern of alpine plants and ecological significance of siderophore release.
    In: Aspects of Applied Biology 98, pp. 105 - 108.

  • Huber, L.; Hoffmann, M.; Rühl, E.; Kirchmair, M. (2009): Disease suppressiveness of vineyard soils infested with grape phylloxera.
    In: Acta Horticulturae 816, pp. 41 - 52.

  • Illmer, P.; Gstraunthaler, G. (2009): Effect of seasonal changes in quantities of biowaste on full scale anaerobic digester performance.
    In: Waste Management 29, pp. 162 - 167. (DOI)

  • Illmer P.; Schwarzenauer T.; Malin,C.; Wagner A. O.; Miller L. M.; Gstraunthaler G. (2009): Process parameters within a 750,000 litre anaerobic digester during a year of disturbed fermenter performance.
    In: Waste Management 29/6, pp. 1838 - 1843.

  • Insam, H.; Franke-Whittle, I.H.; Knapp, B.A.; Plank, R. (2009): Use of wood ash and anaerobic sludge for grassland fertilization: Effects on plants and microbes.
    In: Bodenkultur 60, pp. 39 - 51.

  • Kaltseis, J.; Rainer, J.; de Hoog, G.S (2009): Ecology of Pseudallescheria and Scedosporium species in human-dominated and natural environments and their distribution in clinical samples.
    In: Medical Mycology 47, pp. 398 - 405.

  • Kirchmair, M.; Neuhauser, S.; Voloshchuk, N.; Hoffmann, M.; Strasser, H.; Huber, L. (2009): Biological control of grape phylloxera – a historical review and future prospects.
    In: Acta Horticulturae 816, pp. 13 - 18.

  • Knapp, B.A.; Podmirseg, S.M.; Seeber, J.; Meyer, E.; Insam, H. (2009): Diet-related composition of the gut microbiota of Lumbricus rubellus as revealed by a molecular fingerprinting technique and cloning.
    In: Soil Biology & Biochemistry 41/11, pp. 2299 - 2307. (DOI)

  • Knapp, B.A.; Seeber, J.; Podmirseg, S.M.; Meyer, E.; Rief, A.; Insam, H. (2009): Molecular fingerprinting analysis of the gut microflora of Cylindroiulus fulviceps (diplopoda).
    In: Pedobiologia 52/5, pp. 325 - 336. (DOI)

  • Krpata, D.; Fitz, W.; Peintner, U.; Langer, I.; Schweiger, P (2009): Bioconcentration of zinc and cadmium in ectomycorrhizal fungi and associated aspen trees as affected by level of pollution.
    In: ENVIRONMENTAL POLLUTION 157, pp. 280 - 286.

  • Lins, P.; Illmer, P. (2009): Thermodynamische Aspekte der anaeroben Vergärung.
    In: Müll und Abfall - Fachzeitschrift für Behandlung und Beseitigung von Abfällen 12, pp. 604 - 608.

  • Margesin, R. (2009): Effect of temperature on growth parameters of psychrophilic bacteria and yeasts.
    In: Extremophiles 13/2, pp. 257 - 262.

  • Margesin, R.; Jud, M.; Tscherko, D.; Schinner, F. (2009): Microbial communities and activities in alpine and subalpine soils.
    In: FEMS Microbiology Ecology 67, pp. 208 - 218.

  • Neuhauser, S.; Huber, L.; Kirchmair, M. (2009): A DNA based detection method for Roesleria subterranea in grapevine roots and soil samples.
    In: PHYTOPATHOLOGIA MEDITERRANEA 48, pp. 59 - 72.

  • Neuhauser, S.; Huber, L.; Kirchmair, M. (2009): Sorosphaera viticola a plasmodiophorid parasite of grapevine.
    In: PHYTOPATHOLOGIA MEDITERRANEA 48, pp. 136 - 139.

  • Neuhauser, S.; Kirchmair, M. (2009): Ligniera junci, a plasmodiophorid re-discovered in roots of Juncus in Austria.
    In: Österreichische Zeitschrift für Pilzkunde / Austrian Journal of Mycology 18, pp. 151 - 157.

  • Plaza, G.A.; Łukasik, W.; Nałęcz-Jawecki, G.; Margesin, R. (2009): Application of the root elongation test as indicator to assess phytotoxicity of contaminated soils.
    In: FRESENIUS ENVIRONMENTAL BULLETIN 18, pp. 353 - 359.

  • Schön, M.A.; Sperl, D.; Gadermaier, M.; Goberna, M.; Franke-Whittle, I.; Insam, H.; Ablinger, J.; Wett, B. (2009): Population dynamics at digester overload conditions.
    In: Bioresource Technology 100/23, pp. 5648 - 5655.

  • Suárez-Santiago, V.N.; Ortega, A.; Peintner, U.; López-Flores, I. (2009): Study on Cortinarius subgenus Telamonia section Hydrocybe in Europe, with especial emphasis on Mediterranean taxa.
    In: Mycological Research - the International Journal of Fungal Biology 113, pp. 1070 - 1090.

  • Vrabl, P.; Mutschlechner, W.; Burgstaller, W. (2009): Dynamics of adenine nucleotides and energy charge during uncoupling of catabolism and anabolism in Penicillium ochrochloron.
    In: Mycological Research - the International Journal of Fungal Biology 113/12, pp. 1422 - 1432. (DOI) (Web link)

  • Wagner, A.O.; Malin, C.; Illmer, P. (2009): Application of denaturing high-performance liquid chromatography in microbial ecology: Fermenter sludge, compost, and soil community profiling.
    In: Applied and Environmental Microbiology 75, pp. 956 - 964.

  • Wang, H.; Hutwimmer, S.; Strasser, H.; Burgstaller, W. (2009): Destruxin production of Metarhizium anisopliae under carbon and nitrogen exhaustion.
    In: Journal of Basic Microbiology 49/4, pp. 404 - 411. (DOI) (Web link)

  • Zambonelli, A.; Peintner, U.; Iotti, M.; Barbieri, E.; Amicucci, A.; Stocchi, V.; Hall, I. R. (2009): The Microbial Communities and Fruiting of Edible Ectomycorrhizal Mushrooms.
    In: Acta Botanica Yunnanica Suppl 15, pp. 81 - 85.

Journal Article (Review)
  • Toepfer, S.; Haye, T.; Erlandson, M.; Goettel, M.; Lundgren, J.; Kleespies, R.G.; Weber, D.; Jackson, J.; Peters, A.; Cabrera Walsh, G.; Ehlers, R.U.; Strasser, H.; Keller, S.; Moore, D.; Vidal, S.; Kuhlmann, U. (2009): A review of the natural enemies of beetles in the subtribe Diabroticina (Coleoptera: Chrysomelidae): Implications for sustainable pest management.
    In: Biocontrol Science and Technology 19, pp. 1 - 65.

Journal Article (Meeting-Abstract)
  • Lackner, M.; Gerrits van den Ende, B.; de Hoog, G. S.; Kaltseis, J. (2009): Barcoding of the refractory species of Pseudallescheria and Scedosporium.
    In: MYCOSES 52, pp. 384 - 385.

  • Lackner, M.; Gerrits van den Ende, B.; Pöder, R.; Zündorf, J.; Nidermajer, S.; Horré, R. (2009): Number of complete chromosome sets (ploidy) in Pseudallescheria/Scedosporium strains.
    In: MYCOSES 52, pp. 423 - 424.

  • Rainer, J.; Eggertsberger, M.; Kaltseis, J. (2009): Prevalence of the human pathogenic microascaceae Scedosporium/Pseudallescheria in dwellings.
    In: MYCOSES 52, p. 407.

  • Vrabl, P.; Schinagl, C.; Burgstaller, W. (2009): Growth kinetics of filamentous fungi in batch culture: textbook knowledge and reality.
    In: MYCOSES 52, p. 430.

Book Chapter (Original Paper)
  • Haselwandter, K.; Winkelmann, G. (2009): Siderophores of Mycorrhizal Fungi: Detection, Isolation and Identification.
    In: Varma, A.; Kharkwal, A.C.: Symbiotic Fungi. Principles and Practice. Dordrecht - Heidelberg - London - New York - Berlin: Springer (= Soil Biology, 18), ISBN 978-3-540-95893-2, pp. 393 - 402.

Proceedings Article (Full Paper)
  • Kirchmair, M.; Neuhauser, S.; Strasser, H.; Huber, L. (2009): Fungal BCAs in viticulture: compatibility with common fungicides.
    In: Ehlers, R.; Crickmore, N.; Enkerli, J.; Glazer, I.; Lopez-Ferber, M.; Tkaczuk, C.: Working Group "Insect Pathogens and Insect Parasitic Nematodes" and COST Action 862 "Bacterial Toxins for Insect Control".12th Meeting "Future Research and Development in the Use of Microbial Agents and Nematodes for Biological Insect Control". Proceedings of the meeting at Pamplona (Spain), 22-25 June, 2009. IOBC wprs (= IOBC/wprs Bulletin, 45), ISBN 978-92-9067-219-7, pp. 283 - 286.

  • Koubová, A.; Knapp, B.A.; Insam, H.; Pizl, V.; Elhottova, D. (2009): Archaeal and bacterial community impacted by the earthworm gut passage.
    In: Proceedings of the 10th Central European Workshop on Soil Zoology, České Budějovice, Czech Republic, April 21-24, 2009. Eigenverlag.

  • Schrott, M.; Knapp, B.A.; Wagner, A.O.; Seeber, J.; Meyer, E.; Insam, H. (2009): Molecular and cultivation-dependent analyses of the gut microbiota of Lumbricus rubellus and Cylindroiulus fulviceps.
    In: Proceedings of the 10th Central European Workshop on Soil Zoology, České Budějovice, Czech Republic, April 21-24, 2009. Eigenverlag.

  • Strasser, H. (2009): Concepts and visions to overcome problems with microbial biocontrol agent registration.
    In: Ehlers, R.; Crickmore, N.; Enkerli, J.; Glazer, I.; Lopez-Ferber, M.; Tkaczuk, C.: Working Group "Insect Pathogens and Insect Parasitic Nematodes" and COST Action 862 "Bacterial Toxins for Insect Control".12th Meeting "Future Research and Development in the Use of Microbial Agents and Nematodes for Biological Insect Control". Proceedings of the meeting at Pamplona (Spain), 22-25 June, 2009. IOBC wprs (= IOBC/wprs Bulletin, 45), ISBN 978-92-9067-219-7, pp. 41 - 46.

Proceedings Article (Abstract)
  • Bunge, Michael; Araghipour, Nooshin; Mikoviny, Tomas; Dunkl, Jürgen; Schnitzhofer, Ralf; Hansel, Armin; Schinner, Franz; Wisthaler, Armin; Margesin, Rosa; Märk, Tilmann D. (2009): On-Line PTR-MS Monitoring of Volatile Metabolites in the Dynamic Headspace of Microbial Cultures.
    In: Hansel, Armin; Dunkl, Jürgen: Contributions. 4th International Conference on Proton Transfer Reaction Mass Spectrometry and Its Applications. Innsbruck: innsbruck university press (IUP), ISBN 978-3-902571-99-1, p. 212.

  • Lackner, M.; Kaltseis, J.; Gerrits van den Ende, A.H.G.; de Hoog, G.S. (2009): DNA Barcoding: Linkage of taxonomy and clinical diagnostic.
    In: Österreichische Gesellschaft für Medizinische Mykologie, Österreichische Gesellschaft für Analytische Chemie: 1st Joint Workshop of ASMM and ASAC Medical Mycology: From Basic Science to Clinical Needs, Vienna, Austria, 04.12.09-05.12.09. Eigenverlag, p. 25.

  • Lins, P.; Illmer, P. (2009): Application of a lab-scale multiple fermenter system.
    In: Kopecny, J.; Simunek, J.; Avgustin, G.; Javorsky, P.: 6th International Symposium on Anaerobic Microbiology (ISAM 2009). Conference Book. Eigenverlag, p. 103.

  • Margesin, R. (2009): Hydrocarbon bioremediation in alpine soils.
    In: Proceedings of the 09th Finnish Conference of Environmental Science, Lahti, Finland, May 14-15, 2009. Eigenverlag.

  • Neuhauser, S. (2009): Die Schwierigkeit das Unsichtbare sichtbar zu machen – oder –Wissenschaftskommunikation ein Drahtseilakt?
    In: SciCom09, 16.-17. November 2009, Vienna, Austria. Eigenverlag.

  • Plaza, G.; Gawior, K.; Jawecki-Nalecz, G.; Margesin, R. (2009): The application of biotests as an indicator of soil contamination.
    In: Proceedings of the 3rd International Conference "Innovative solutions of revitalization of degraded areas". Eigenverlag.

  • Vrabl, P.; Burgstaller, W. (2009): Overflow metabolism is independent of the energetic status in Penicillium ochrochloron.
    In: Austrian Association of Molecular Life Sciences and Biotechnology: 1st Annual Meeting of the Austrian Association of Molecular Life Sciences and Biotechnology, 21.-23. September 2009, Innsbruck, Austria. Innsbruck: Leopold-Franzens-Universität Innsbruck, p. 63.

  • Vrabl, P.; Mustchlechner, W.; Müller, B.; Burgstaller, W. (2009): Underestimating fungal variability.
    In: Austrian Association of Molecular Life Sciences and Biotechnology: 1st Annual Meeting of the Austrian Association of Molecular Life Sciences and Biotechnology, 21.-23. September 2009, Innsbruck, Austria. Innsbruck: Leopold-Franzens-Universität Innsbruck, p. 64.

  • Vrabl, P.; Schinagl, C.; Burgstaller, W. (2009): Microbial growth kinetics in batch culture revised: questioning the textbook growth curve.
    In: Austrian Association of Molecular Life Sciences and Biotechnology: 1st Annual Meeting of the Austrian Association of Molecular Life Sciences and Biotechnology, 21.-23. September 2009, Innsbruck, Austria. Innsbruck: Leopold-Franzens-Universität Innsbruck, p. 58.

  • Wagner, A.O.; Malin, C.; Illmer, P., (2009): Use of dHPLC for the analysis of microbial clones.
    In: Kopecny, J.; Simunek, J.; Avgustin, G.; Javorsky, P.: 6th International Symposium on Anaerobic Microbiology (ISAM 2009). Conference Book. Eigenverlag, p. 36.

Contribution to Textbook, Scientific
  • Hoffmann, K.; Telle, S.; Walther, G.; Eckart, M.; Kirchmair, M.; Prillinger, H.J.; Prazenica, A.; Newcombe, G.; Dölz, F.; Papp, T.; Vágvölgyi, C.; de Hoog, S.; Olsson, L.; Voigt, K. (2009): Diversity, genotypic identification, ultrastructural and phylogenetic characterization of zygomycetes from different ecological habitats and climatic regions: Limitations and utility of nuclear ribosomal DNA barcode markers.
    In: Gherbawy, Y.: Current Advances in Molecular Mycology. Hauppauge, N.Y.: Nova Science Publishers, ISBN 978-1-60456-909-4, pp. 263 - 312.

Journal Article in Professional / Transfer-Oriented Journal
  • Strasser, H. (2009): Biologisch gegen den Mai- und Gartenlaubkäfer.
    In: Grünes Tirol 3, pp. 123 - 126.

Book Chapter, Transfer-Oriented
  • Pöder, R. (2009): Ohne Pilze kein Wald.
    In: Hofer, Rudolf: Die Alpen - Einblicke in die Natur. Innsbruck: innsbruck university press (IUP), ISBN 978-3-902719-02-7, pp. 61 - 66.

(Book) Reviews

Journal Article (Book Review)
  • Neuhauser, S. (2009): Rezension zu "Sogonov M.V., Castelbury L.A., Rossman A.Y., Mejía L.C. & White J.F. (2008) Leaf-inhabiting genera of the Gnomoniaceae, Diaporthales. Studies in Mycology 62: 79 pp".
    In: Sydowia 61, p. 190.

  • Pöder, R. (2009): Rezension zu "de Hoog G.S. & M. Grube (eds) (2008) Black fungal extremes. Studies in Mycology 61: 194 pp".
    In: Sydowia 61, p. 189.

Other Publications

Database, Scientific
  • Andre, G.; Sailer, F.; Pöder, R. (2009): EMMA 2.0 (Ectomycorrhiza Monitoring Application). (Web link)