Publications of the Institute of Microbiology 2008

Publications 2008

(Co-)Edited Books

Anthology / Collected Edition (Editorship)
  • Margesin, Rosa; Schinner, Franz; Marx, Jean-Claude; Gerday, Charles (Ed.) (2008): Psychrophiles: from Biodiversity to Biotechnology. Dordrecht - Heidelberg - London - New York - Berlin: Springer. ISBN 978-3-540-74334-7.

  • Psenner, R.; Lackner, R.; Walcher, M. (2008): Ist es der Sindtfluss? Kulturelle Strategien & Reflexionen zur Prävention und Bewältigung von Naturgefahren. Innsbruck: innsbruck university press (IUP) (= alpine space - man & environment: vol. 4, 4). ISBN 978-3-902571-32-8. (Web link)

(Co-)Edited Journals and Book Series

(Co-)Editorship of Book Series and Journals
  • Goberna, M.: Mitglied Editiorial Board / Gutachten - Applied Soil Ecology, 2008-06-01 - 2009-07-02.

  • Illmer, P.: Associate Editor / Gutachter - Journal of Environmental Quality, 2004-01-01 on-going.

  • Insam, H.: Chief Editor - Applied Soil Ecology, 2005-01-01 on-going. (Web link)

  • Margesin, R.: Member of the Editorial Board - International Biodeterioration & Biodegradation, 2002-01-01 on-going.

  • Peintner, U.: Mitglied im Editorial Board - Micologia e Vegetazione Mediterranea, 2005-01-01 on-going.

  • Pöder, R.: Editorial Committee/Editorial Board - Rivista di Micologia, 2005-01-01 on-going.

  • Pöder, R.: Editorial Committee/Editorial Board - Acta Mycologica, 2005-01-01 on-going.

Contributions to Books / Journals

Journal Article (Original Paper)
  • Bidartondo, M.I.; Bruns, Thomas D.; Blackwell, Meredith; Edwards, Ivan; Pöder, Reinhold et al. (2008): Preserving Accuracy in GenBank.
    In: Science 319/5870, p. 1616. (DOI) (Web link)

  • Bunge, M.; Araghipour, N.; Mikoviny, T.; Dunkl, J.; Schnitzhofer, R.; Hansel, A.; Schinner, F.; Wisthaler, A.; Margesin, R.; Märk, T.D. (2008): On-line PTR-MS monitoring of volatile metabolites in the dynamic headspace of microbial cultures.
    In: Applied and Environmental Microbiology 74, pp. 2179 - 2186.

  • Danon, M.; Franke-Whittle, I.H.; Insam, H.; Chen, Y.; Hadar, Y. (2008): Molecular analysis of bacterial community succession during prolonged compost curing.
    In: FEMS Microbiology Ecology 65, pp. 133 - 144.

  • Haselwandter, K. (2008): Structure and function of siderophores produced by mycorrhizal fungi.
    In: Mineralogical Magazine 72, pp. 61 - 64.

  • Hutwimmer, S.; Wagner, S.; Affenzeller, M.; Burgstaller, W.; Strasser H. (2008): Algorithm-based design of novel synthetic media for Metarhizium anisopliae simulating its nutritional conditions in the environment.
    In: JOURNAL OF APPLIED MICROBIOLOGY 105/2, pp. 459 - 468. (DOI) (Web link)

  • Hutwimmer, S.; Wagner, S.; Affenzeller, M.; Burgstaller, W.; Strasser H. (2008): Algorithm-based design of synthetic growth media stimulating virulence properties of Metarhizium anisopliae conidia.
    In: JOURNAL OF APPLIED MICROBIOLOGY 105/6, pp. 2026 - 2034.

  • Insam, H.; Wett, B. (2008): Control of GHG emission at the microbial community level.
    In: Waste Management 28/4, pp. 699 - 706. (DOI)

  • Kirchmair, M.; Neuhauser, S.; Buzina, W.; Huber, L. (2008): The taxonomic position of Roesleria subterranea.
    In: Mycological Research - the International Journal of Fungal Biology 112, pp. 1210 - 1219.

  • Klammer, S.; Dell’Abate, M.T.; Ros, M.; Knapp, B.; Insam, H. (2008): Bacterial community patterns and thermal analyses of composts of various origins.
    In: Waste Management & Research 26, pp. 173 - 186.

  • Knapp, B.A.; Seeber, J.; Podmirseg, S.M.; Meyer, E.; Insam, H. (2008): Application of denaturing gradient gel electrophoresis for analysing the gut microflora of Lumbricus rubellus Hoffmeister under different feeding conditions.
    In: Bulletin of Entomological Research 98/3, pp. 271 - 279. (DOI)

  • Krpata, D.; Peintner, U.; Langer, I.; Fitz, W.J.; Schweiger, P. (2008): Ectomycorrhizal communities associated with Populus tremula growing on a heavy metal contaminated site.
    In: Mycological Research - the International Journal of Fungal Biology 112, pp. 1069 - 1079.

  • Kuba, T.; Tschöll, A.; Partl, C.; Meyer, K.; Insam, H. (2008): Wood ash admixture to organic wastes improves compost and its performance.
    In: Agriculture, Ecosystems & Environment 127/1-2, pp. 43 - 49.

  • Kuhnert, R.; Mühlmann, O.; Oberkofler, I.; Peintner, U. (2008): Plant cover influences soil fungal communities in an alpine primary successional habitat.
    In: Mitteilungen der Österreichischen Bodenkundlichen Gesellschaft 75, pp. 63 - 69.

  • Langer, I.; Krpata, D.; Peintner, U.; Wenzel, W.W.; Schweiger, P. (2008): In vitro ectomycorrhizal synthesis on the European aspen Populus tremula L.
    In: Mycorrhiza 18, pp. 297 - 307.

  • Malin, C.; Illmer, P. (2008): Ability of DNA content and DGGE analysis to reflect the performance condition of an anaerobic biowaste fermenter.
    In: Microbiological Research 163/5, pp. 503 - 511. (Web link)

  • Margesin, R.; Fell, J.F. (2008): /Mrakiella cryoconiti/ gen. nov., sp. nov., a psychrophilic, anamorphic, basidiomycetous yeast from alpine and arctic habitats.
    In: International Journal of Systematic and Evolutionary Microbiology 58, pp. 2977 - 2982.

  • Mühlmann, O.; Bacher, M.; Peintner, U. (2008): Polygonum viviparum mycobionts on an alpine primary successional glacier forefront.
    In: Mycorrhiza 18/2, pp. 87 - 95.

  • Mühlmann, O.; Peintner, U. (2008): Ectomycorrhiza of Kobresia myosuroides at a primary successional glacier forefront.
    In: Mycorrhiza 18, pp. 355 - 362.

  • Mühlmann, O.; Peintner, U. (2008): Mycobionts of Salix herbacea on a glacier forefront in the Austrian Alps.
    In: Mycorrhiza 18/4, pp. 171 - 180.

  • Neuhauser, S.; Lass-Flörl, C.; Buzina, W.; Mayr, A.; Kirchmair, M. (2008): A rapid DNA extraction protocol for a PCR-based detection of Histoplasma capsulatum in bat guano.
    In: Sydowia 60, pp. 123 - 130.

  • Oberkofler, I.; Peintner, U. (2008): Detection of soil fungal communities in an alpine primary successional habitat: Does pooling of DNA extracts affect investigations?
    In: Annals of Microbiology 58, pp. 585 - 595.

  • Rainer, J.; Kaltseis, J.; de Hoog, GS.; Summerbell, RC. (2008): Efficacy of a selective isolation procedure of the Pseudallescheria boydii complex.
    In: Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology 93/3, pp. 315 - 322.

  • Ros, M.; Goberna, M.; Pascual, J.A.; Klammer, S.A.; Insam, H. (2008): 16S rDNA analysis reveals low diversity in microorganisms discriminating community level physiological profiles.
    In: Journal of Microbiological Methods 72, pp. 221 - 226.

  • Schrettl, M.; Kim, H. S.; Eisendle, M.; Kragl, C.; Niermann, W. C.; Heinekamp, T.; Werner, Ernst; Jakobsen, I.; Illmer, P.; Yi, H.; Brakhage, A. A.; Haas, H (2008): SreA-mediated iron regulation in Aspergillus fumigatus.
    In: MOLECULAR MICROBIOLOGY 70/1, pp. 27 - 43.

  • Vrabl, P.; Mutschlechner, W.; Burgstaller, W. (2008): Characteristics of glucose uptake by glucose- and NH4-limited grown Penicillium ochrochloron at low, medium and high glucose concentration.
    In: FUNGAL GENETICS AND BIOLOGY 45, pp. 1380 - 1392. (Web link)

  • Wagner, A.O.; Gstraunthaler, G.; Illmer, P. (2008): Survival of bacterial pathogens during the thermophilic anaerobic digestion of biowaste: laboratory experiments and in situ validation.
    In: ANAEROBE 14/3, pp. 181 - 183. (DOI)

  • Wagner, A.O.; Malin, C.; Gstraunthaler, G.; Illmer, P. (2008): Survival of selected pathogens in diluted sludge of a thermophilic waste treatment plant and in NaCl-solution under aerobic and anaerobic conditions.
    In: Waste Management 29, pp. 425 - 429. (DOI)

  • Wagner, A.O.; Malin, C.; Knapp, B.; Illmer, P. (2008): Removal of free extracellular DNA in environmental samples by ethidium monoazide (EMA) and propidium monoazide (PMA).
    In: Applied and Environmental Microbiology 74/8, pp. 2537 - 2539.

Journal Article (Meeting-Abstract)
  • Bacher, M.; Mühlmann, O.; Peintner, U. (2008): Molecular diversity of mycobionts of Polygonum viviparum growing in alpine primary successional sites.
    In: Berichte des naturwissenschaftlich-medizinischen Vereins in Innsbruck, Supplementum 18, p. 33.

  • Eggertsberger, M.; Rainer, J.; Kaltseis, J.; Pöder, R (2008): Temperature dependence and environmental conditions enhancing the distribution of the opportunistic pathogens P. boydii and S. apiospermum.
    In: MYCOSES 51, pp. 434 - 435.

  • Fleisch, M.; Erschbamer, B.; Peintner, U. (2008): Mycorrhizal status of pioneer plants growing on primary successional habitats of the Rotmoosferner glacier foreland.
    In: Berichte des naturwissenschaftlich-medizinischen Vereins in Innsbruck, Supplementum 18, p. 36.

  • Kaltseis, J.; Rainer, J.; Zacke, A.; Pöder, R (2008): Population genetic studies for the distribution of Pseudallescheria and Scedosporium strains in urban areas.
    In: MYCOSES 51, pp. 417 - 418.

  • Kirchmair, M.; Strasser, H. (2008): Evaluierung gesundheitlicher Risiken durch biologische Schädlingskontrolle am Beispiel des Pilzwirkstoffes Melocont®-Pilzgerste.
    In: Umweltmedizin in Forschung und Praxis 13/5, p. 280.

  • Kirchmair, M.; Strasser, H. (2008): Serpula lacrymans, an emerging problem in converted alpine barns and huts.
    In: Umweltmedizin in Forschung und Praxis 13/5, p. 315.

  • Kuhnert, R.; Oberkofler, I.; Peintner, U. (2008): Seasonal changes of soil fungal biomass in an alpine habitat.
    In: Berichte des naturwissenschaftlich-medizinischen Vereins in Innsbruck, Supplementum 18, p. 20.

  • Lackner, M.; Pöder, R.; Horré, R (2008): Culture characteristics of Pseudallescheria/ Scedo-sporium strains.
    In: MYCOSES 51, pp. 402 - 403.

  • Mühlmann, O.; Oberkofler, I.; Peintner, U. (2008): Ectomycorrhizal plant species and their mycobionts in 150 year old soils.
    In: Berichte des naturwissenschaftlich-medizinischen Vereins in Innsbruck, Supplementum 18, p. 23.

  • Oberkofler, I.; Peintner, U. (2008): Influence of plant cover on the development of soil fungal communities in 150 year old soils.
    In: Berichte des naturwissenschaftlich-medizinischen Vereins in Innsbruck, Supplementum 18, p. 25.

  • Peintner, U.; Mühlmann, O.; Aiardi, A.; Bizio, E.; Campo, E.; Moreau, P.-A.; Turrini, G.; Bellu, F.; Oberkofler, I.; Bacher, M.; Kuhnert, R. (2008): Fungi associated with plant communities at a glacier forefront in the Austrian Alps.
    In: Berichte des naturwissenschaftlich-medizinischen Vereins in Innsbruck, Supplementum 18, p. 41.

  • Rainer, J.; Kofler, H. (2008): Evaluation of airborne fungi and successful strategies of allergen avoidance.
    In: MYCOSES 51, p. 384.

Book Chapter (Original Paper)
  • Fuchs, B.; Haselwandter, K. (2008): Arbuscular Mycorrhiza of Endangered Plant Species: Potential Impacts on Restoration Strategies.
    In: Varma, A.: Mycorrhiza. State of the Art, Genetics and Molecular Biology, Eco-Function, Biotechnology, Eco-Physiology, Structure and Systematics. Dordrecht - Heidelberg - London - New York - Berlin: Springer, ISBN 978-3-540-78824-9, 3rd ed., pp. 565 - 579.

  • Strasser, H.; Hutwimmer, S.; Zelger, R. (2008): Fungal control of subterranean pests.
    In: Robson, G.; van West, P.; Gadd, G.M. (Ed.): Exploitation of Fungi. Cambridge: Cambridge University Press (= British Mycological Society Symposia, 26), ISBN 9780521859356, pp. 247 - 274.

Proceedings Article (Full Paper)
  • Goberna, M.; Gadermaier, M.; Schön, Michael A.; Franke-Whittle, I.H; Wett, Bernhard; Insam, Heribert (2008): Fingerprinting the Microbial Communities in Organic Wastes using Oligonucleotide Microarrays and Real-Time PCR.
    In: Lobo, C.; Sastre, I.: Second International meeting of Soil Enzymology 2008. Murcia: Spanish Group of Soil Enzymology.

  • Schinner, F.; Bonn, G.; Hansel, A.; Huck, C.; Margesin, R.; Rauch, W.; Wett, B.; Wisthaler, A. (2008): Umweltforschung und Biotechnologie.
    In: Grumiller, M.; Märk, T.D. (Series Editors): Zukunftsplattform Obergurgl 2008. Forschungskooperationen innerhalb der Leopold-Franzens-Universität Innsbruck. Innsbruck: innsbruck university press (IUP), ISBN 978-3-902571-79-3, pp. 251 - 256.

  • Schön, Michael A.; Sperl, D.; Gadermaier, M.; Goberna, M.; Franke-Whittle, I; Insam, Heribert; Wett, Bernhard (2008): Comparison of biogas plant start-up procedures based on lab- and full-scale data and on numerical modelling.
    In: Venice 2008 - Second International Symposium on Energy from Biomass and Waste. Conference Proceedings. Padova: International Waste Working Group (IWWG).

  • Schön, Michael A.; Sperl, D.; Goberna, M.; Franke-Whittle, I.; Insam, Heribert; Wett, Bernhard (2008): Comparison of biogas plant start-up procedures based on lab- and full-scale data on numerical modelling.
    In: Rodic-Wiersma, L.; Barth, J.; Bidlingmaier, W.; de Bertoldi, M.: Conference paper summaries of the International Conference ORBIT 2008. Weimar: Orbit e.V.

  • Seewald, M.; Schnitzhofer, R.; Singer, W.; Bonfanti, M.; Hansel, A.; Insam, H. (2008): Tracing compost amendment by PTR-MSdetection of volatile organic compounds (VOCs.
    In: Rodic-Wiersma, L.; Barth, J.; Bidlingmaier, W.; de Bertoldi, M.: Conference paper summaries of the International Conference ORBIT 2008. Weimar: Orbit e.V., pp. 800 - 805.

Proceedings Article (Abstract)
  • Hong, S.G.; Kim, K.M.; Cho, J.C.; Oh, H.M.; Cho, K.H.; Margesin, R.; Schinner, F.; Lee, H.K. (2008): Bacterial community structure of an alpine cryoconite sample, as revealed by pyrosequencing analyses.
    In: Foght, J.; Greer, C.; Vincent, W.; Whyte, L.: 3rd International Conference on Polar and Alpine Microbiology. Eigenverlag, p. 43.

  • Insam, H.; Danon, M.; Chen, Y.; Hadar, Y.; Knapp, B.; Fuchs, J.; Franke-Whittle, I.H. (2008): Bacterial community changes during composting and compost curing studied with novel methods.
    In: Rodic-Wiersma, L.; Barth, J.; Bidlingmaier, W.; de Bertoldi, M.: Conference paper summaries of the International Conference ORBIT 2008. Weimar: Orbit e.V., p. 169.

  • Insam, H.; Franke-Whittle, I.; Mayrhofer, S.; Hansel, A.; Knapp, B.A. (2008): From substrate to application: microbes do the job.
    In: Fuchs, J.G.; Kupper, T.; Tamm, L.; Schenk, K. (Hrsg.): Compost and digestate: sustainability, benefits, impacts for the environment and for plant production. Proceedings of the international conference CODIS 2008, Solothurn, Switzerland. Frick: FiBL - Forschungsinstitut für biologischen Landbau, ISBN 978-3-03736-016-3, pp. 175 - 180.

  • Kirchmair, M.; Hoffmann, M.; Neuhauser, S.; Huber, L. (2008): The influence of soil management strategies on soil mycobiota and on disease suppressiveness of vineyard soils.
    In: Turkish Microbiological Society: Abstract book IUMS 2008: XII International Congress of Mycology. Istanbul, Turkey. 05.-09.08.2008. Eigenverlag, p. MP-158.

  • Lackner, M.; Poeder, R.; Grüger, T.; Schnitzler, N.; Zündorf, J.; Schween, U.; Nidermajer, S.; Brandenburg, K.; Reinders, A-L.; Horré, R. (2008): Selective detection of strains of the Pseudallescheria/Scedosporium complex.
    In: Proceedings of the 18th European Congress of Clinical Microbiology and Infectious Diseases, Barcelona, Spain, 19-04-2008 – 22-04-2008. Eigenverlag, p. P2193.

  • Margesin, R.; Hong, S.G.; Jud, M.; Tscherko, D.; Lee, H.K.; Schinner, F. (2008): Microbial activities and communities in alpine soils along an altitudinal gradient.
    In: Foght, J.; Greer, C.; Vincent, W.; Whyte, L.: 3rd International Conference on Polar and Alpine Microbiology. Eigenverlag, p. 3.

  • Neuhauser, S.; Huber, L.; Kirchmair, M. (2008): Roesleria subterranea – an ascomycete associated with grapevine decline in Germany.
    In: International Council of Grapevine Trunk Diseases: Book of Abstracts 6th International Workshop on Grapevine Trunk Diseases (IWGTD). Florence, Italy. 01.-03.09.2008. Eigenverlag, p. 23.

  • Neuhauser, S.; Huber, L.; Kirchmair, M. (2008): Roesleria subterranea root rot in German vineyards: A hidden danger able to cause devastating loss.
    In: Turkish Microbiological Society: Abstract book IUMS 2008: XII International Congress of Mycology. Istanbul, Turkey. 05.-09.08.2008. Eigenverlag, p. MP-150.

  • Neuhauser, S.; Huber, L.; Kirchmair, M. (2008): Sorosphaera viticola, a plasmodiophorid parasite of grapevine.
    In: International Council of Grapevine Trunk Diseases: Book of Abstracts 6th International Workshop on Grapevine Trunk Diseases (IWGTD). Florence, Italy. 01.-03.09.2008. Eigenverlag, p. 57.

  • Pöder, R.; Pernfuß, B. (2008): The ectomycorrhizo-sphere of Norway spruce: an empirical model for the approximation of fungal biomass and hyphal contact areas.
    In: 25° Anno di Fondazione del Centro Studi per la Flora Mediterranea del Midi’ Europa. Convegno Internazionale di Micologia. Borgo Val di Taro (Prov. Parma), Italia, 26.–27.09.2008. Eigenverlag, p. 2.

  • Schön, M.; Sperl, D.; Goberna, M.; Franke-Whittle, I.H.; Insam, H.; Wett, B. (2008): Comparison of biogas-plant start-up procedures based on lab- and full scale data and on numerical modelling.
    In: Rodic-Wiersma, L.; Barth, J.; Bidlingmaier, W.; de Bertoldi, M.: Conference paper summaries of the International Conference ORBIT 2008. Weimar: Orbit e.V., p. 110.

  • Seewald, M.; Schnitzhofer, R.; Singer, W.; Bonfanti, M.; Hansel, A.; Insam, H. (2008): Tracing compost amendment by PTR-MSdetection of volatile organic compounds (VOCs.
    In: Rodic-Wiersma, L.; Barth, J.; Bidlingmaier, W.; de Bertoldi, M.: Conference paper summaries of the International Conference ORBIT 2008. Weimar: Orbit e.V., p. 168.

  • Speiser, B.; Tamm, L.; Bale, J.; Fjelsted, A.; Hokkanen, H.; Menzler-Hokkanen, I.; Kuhlmann, U.; Strasser, H.; Strauch, O.; Ehlers, R.U (2008): Facilitating the registration of biocontrol organisms, plant extracts and semiochemicals in Europe.
    In: Proceedings of the 16th IFOAM Organic World Congress, Modena, Italy. Eigenverlag.

  • Strasser, H.; Typas, M.; Altomare, C.; Butt, T.M. (2008): Proposal on the risk assessment of metabolites produced by micro-organisms in plant protection products.
    In: Ehlers, R.U.; Enkerli, J.; Glaser, I.; López-Ferber, M.; Tkaczuk, C.: Insect Pathogens and Insect Parasitic Nematodes. IOBC wprs, pp. 21 - 26.

(Book) Reviews

Journal Article (Book Review)
  • Margesin, R. (2008): Book review: mycoremediation.
    In: Newsletter of the International Biodeterioration & Biodegradation Society 13, p. 3.

  • Pöder, R. (2008): Rezension zu "Caverri, P.; Liu, M.; Hodge, K.T. Neotropical Hypocrella (anamorph Aschersonia), Moelleriella, and Samuelsia. Studies in Mcycology 60.
    In: Sydowia 60/2, p. 302.

Media Contributions

Article in Popular Magazine
  • Haselwandter, K.: Ökologisch wertvolles Zusammenleben.
    In: Universum of 2008-03-01.